Primer

Part:BBa_K268021

Designed by: Nora Yucel   Group: iGEM09_UChicago   (2009-10-21)


YGR236C -> GFP

~2.6kbp linear DNA fragment used for genomic integration and expression expression of GFP under the control of the promoter for YGR236C gene. For transformation in S. cerevisiae only, this part will swap out the YGR236 gene and replace it with a Kan marker+GFP coding region downstream of the YGR236C promoter. Promoter shown to be up-related by the neurotoxin paraoxon and/or hydrolysis of paraoxon to p-nitrophenol and diethyl-phosphate.

This part can be retrieved from the yeast genome in which it was integrated through colony PCR of the following primers: YGR236Cdel-F: 63-mer CAAATATTTAGCGCATAAAATTCAAACAAAGTTTACTGAAATGcggatccccgggttaattaa YGR236Cdel-R: 65-mer CAAAATGCAAAGAACATAAATGCAGGGAACCAAGTACAAATTCCCgaattcgagctcgtttaaac


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 2462
    Illegal PstI site found at 1226
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 2462
    Illegal PstI site found at 1226
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 2462
    Illegal BglII site found at 1016
    Illegal BamHI site found at 45
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 2462
    Illegal PstI site found at 1226
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 2462
    Illegal PstI site found at 1226
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 705


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Categories
Parameters
None